4 examples of 'python read tsv' in Python

Every line of 'python read tsv' code snippets is scanned for vulnerabilities by our powerful machine learning engine that combs millions of open source libraries, ensuring your Python code is secure.

All examples are scanned by Snyk Code

By copying the Snyk Code Snippets you agree to
26def load_tsv():
27 import pandas as pd
28
29 print('loading with pandas')
30
31 filename = 'mat_cats.tsv'
32 tmp = pd.read_table(filename, sep='\t', index_col=[0,1], skipinitialspace=True, na_values='NaN', keep_default_na=False, usecols=range(12), skip_blank_lines=True)
33
34 # filename = 'mat_2cc_1rc.txt'
35 # tmp = pd.read_table(filename, index_col=[0,1], header=[0,1])
36
37 mat = tmp.values
38 row_names = tmp.index.tolist()
39 col_names = tmp.columns.tolist()
40
41 print(mat)
42 print('\nrow_names')
43 print(row_names)
44 print(len(row_names))
45 print('\ncol names')
46 print(col_names)
47 print(len(col_names))
52def tsvreader(file):
53 reader = csv.reader(file, delimiter='\t')
54 for row in reader:
55 yield row
32def parse_tsv(tsv_fpath):
33 """ Parse a tsv ';' seperated file which was downloaded from vizier
34 """
35 out_dict = {'data_lists':{},
36 'data_units_dict':{}}
37 icol_to_colname = {}
38 lines = open(tsv_fpath)
39 i_signif_line = 0
40 for line_raw in lines:
41 line = line_raw.strip()
42 if len(line) == 0:
43 continue
44 elif line[0] == '#':
45 continue
46 elif i_signif_line == 0:
47 # _RAJ2000;_DEJ2000;Name;RAJ2000;DEJ2000;Bmag;Vmag;SpType;FileName
48 col_names = line.split(';')
49 for i, col_name in enumerate(col_names):
50 out_dict['data_lists'][col_name] = []
51 icol_to_colname[i] = col_name
52 elif i_signif_line == 1:
53 unit_str_list = line.split(';')
54 for i, unit_str in enumerate(unit_str_list):
55 out_dict['data_units_dict'][icol_to_colname[i]] = unit_str
56 elif i_signif_line == 2:
57 pass # skip this but also increment i_signif_line below
58 else:
59 elems = line.split(';')
60 for i, elem in enumerate(elems):
61 out_dict['data_lists'][icol_to_colname[i]].append(elem)
62 i_signif_line += 1
63 return out_dict
58def read_tsv(self):
59 lines = []
60 with self.annotation_file.open('r') as ann_file:
61 reader = csv.reader(ann_file, delimiter="\t", quotechar=None)
62 for idx, line in enumerate(reader):
63 if idx == 0:
64 continue
65 guid = "dev-{}".format(idx)
66 language = line[0]
67 if self.language_filter and language not in self.language_filter:
68 continue
69 label = reversed_label_map[line[1]]
70 text_a = line[6]
71 text_b = line[7]
72 lines.append(InputExample(guid, text_a, text_b, label))
73
74 return lines

Related snippets